If you're looking for unique and memorable stays across Japan, Tokyo Family Stays has curated a list of some fantastic options. Whether you're after a cozy retreat near the beach, a serene temple lodge, or a fun stay in the city, we've got you covered.

Before you travel around, we would be remiss in not mentioning the Japan Rail Pass offers unlimited travel on JR trains, including the iconic Shinkansen, making it an excellent deal for non-residents exploring multiple regions in Japan. Despite the price increase, it still offers substantial savings compared to buying individual tickets, especially if you plan to visit cities further afield like Kyoto, Osaka, Hiroshima or any of the ski areas  from Tokyo by train. It also covers select buses and ferries, providing flexibility for exploring remote areas. With the convenience of hopping on and off trains, the pass is a hassle-free way to see more of Japan at a lower cost. You can book one in advance here.

Some travelers might find that buying individual tickets could be cheaper, especially if only visiting a few destinations. To help decide, there are online calculatorsthat can compare the costs of tickets versus the pass based on your itinerary. However, the convenience of the unlimited pass—allowing you to hop on and off trains without worrying about ticket prices—can still make it worthwhile, especially if you value flexibility. Additionally, regional passes, which are cheaper than the full Japan-wide pass, can be a great option if you're focusing on specific areas like Kansai or Kyushu.

Now onto the main part of this post, presenting some of our favorite short-term rentals run by wonderful hosts, offering something special for everyone.

Maneki Machiya is a charming, traditional Japanese townhouse located in the heart of Kyoto run by Susan, offering an authentic and serene experience for visitors. The machiya combines historical architecture with modern amenities, ensuring a comfortable stay while immersing guests in the rich cultural heritage of the area. It's an ideal place to stay for those looking to explore Kyoto's ancient temples, vibrant markets, and scenic beauty, all within a uniquely local setting. Check out Maneki Machiya

This stunning beach house in Shimoda offers the ultimate coastal getaway. With pristine beaches and crystal-clear waters just steps away, it’s perfect for those seeking sun, sand, and relaxation. The property’s modern design and airy ambiance create a calming retreat, ideal for families or couples looking to unwind by the sea. Learn more about Shimoda Beach House

Set on the historic Nakasendo trail, this rehomed Edo-period horse stable offers an authentic Japanese minpaku experience. With stunning views of Mt. Myogi and Usui Pass, it’s a perfect base for hiking, cycling, and exploring the countryside. Attached to a cycling tour company, this lodge is a dream for serious cyclists, offering bike rentals and road tours. Learn more about Gunma Mountain Lodge/GS Astuto Riders

Tucked away in the rural countryside of Nagano, Iida Country House is a dog-friendly retreat surrounded by nature. Run by Tom Carrick, this quiet getaway is perfect for those who enjoy the outdoors and are looking to explore Japan's rustic side. Whether hiking or just relaxing in the peaceful countryside, this house offers a true escape. Learn more about Iida Country House

For those wanting a city stay with a traditional touch, try this traditional house which offers a serene blend of modern comforts and historical charm. Located in the cultural heart of Kyoto, this lovely home allows you to explore iconic temples and gardens, while enjoying a tranquil space to unwind after a day of sightseeing. Learn more about this traditional home

Yuki Villa is a self-contained three-storey villa perfect for couples, families or small groups. Located in a picturesque street in the township of Iiyama, 1km – 3 minutes drive from Iiyama Shinkansen station.

Located within 20-30 minutes to not just one, but 10 different ski resorts in Nagano and Niigata Prefectures. These include Nozawa Onsen, famous for its snow powder; Shiga Kogen, the highest and largest ski resort in Japan; to Myoko and Suginohara, with its 8.5km long ski run.

Hosts are Denise and Patrick McCann who describe themselves as snow lovers, wine connoisseurs, restaurant gourmands, artists and gallivanters. Anywhere their travels take them, they seek out food, wine, museums, galleries and markets. It is all about people, place and produce. Explore Tsuki Villa

Located in the heart of one of Japan’s premier ski regions, Hakuba Mountain Chalet is the perfect spot for winter sports enthusiasts. With ski slopes and outdoor activities at your doorstep, this cozy chalet offers a true mountain retreat with stunning alpine views. A great choice for adventurers and families alike. Learn more about Hakuba Mountain Chalet

These are just a few of the amazing places we love to support. Whether you're planning a cultural escape, a beach retreat, or a ski adventure, these short-term rentals across Japan offer something unique for every traveler. Of course, for your Tokyo leg of the visit booking with Tokyo Family Stays is a must for providing a home-like comfort while you explore the vibrant city. With options tailored to every type of traveler, from families to solo adventurers, these accommodations ensure that your stay is both memorable and enjoyable. Happy exploring!